PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_008224874.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family bHLH
Protein Properties Length: 238aa    MW: 26134.6 Da    PI: 6.9382
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_008224874.1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH36.96.4e-1282128554
                     HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
             HLH   5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                     +  rE+ RRdr+N++f eL ++l +    + +K +Ka+iL  Av+ +++L
  XP_008224874.1  82 KACREKMRRDRLNDRFLELSSMLEPG---RPPKTDKAAILGDAVRVVNQL 128
                     678**********************8...89***************9998 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088813.14877128IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000838.30E-1081133No hitNo description
PfamPF000102.2E-981128IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003537.1E-1183134IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.07E-1383153IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.109.8E-1384150IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd146860.00528143175No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 238 aa     Download sequence    Send to blast
MGSPPQNHNW VFDYGVLEDI PVPGGDLPPL DLPGFTWPSH SFVAPAAPSV DFDDSFGNSD  60
SIKESGCRKR VRSGSCNVTG SKACREKMRR DRLNDRFLEL SSMLEPGRPP KTDKAAILGD  120
AVRVVNQLRG EAQQLKDSNG DLQEKINELK AEKNELRDEK QRLKTEKENI ERQIKALNTQ  180
PGFLPHPAAI PGPFSAPGQV VGGKLMPFVG YPGVSMWQFM PPAAVDTSQD HVLRPPVA
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKP6894250.0KP689425.1 Prunus pseudocerasus isolate Unigene14417 bHLH transcription factor mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008224874.11e-176PREDICTED: transcription factor ILR3-like
SwissprotQ9FH373e-93ILR3_ARATH; Transcription factor ILR3
TrEMBLM5WIN31e-174M5WIN3_PRUPE; Uncharacterized protein
STRINGPOPTR_0011s03360.11e-123(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF16023486
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G54680.13e-92bHLH family protein